LOCUS       reference_p10           9074 bp    DNA              UNK 23-SEP-2015
DEFINITION  reference for patient p10, genomewide
ACCESSION   reference_p10
VERSION     reference_p10
KEYWORDS    .
SOURCE      
  ORGANISM  HIV-1
            .
FEATURES             Location/Qualifiers
     fragment        1..1777
                     /note="F1"
     fragment        1470..3322
                     /note="F2"
     fragment        3112..4639
                     /note="F3"
     fragment        4377..6038
                     /note="F4"
     fragment        5437..7498
                     /note="F5"
     fragment        7291..9074
                     /note="F6"
     RNA_structure   7252..7485
                     /note="RRE"
     RNA_structure   1..87
                     /note="LTR5'"
     RNA_structure   8569..9074
                     /note="LTR3'"
     gene            5515..5778
                     /note="vpu"
     gene            join(5284..5498,7862..7952)
                     /note="tat"
     gene            1539..4550
                     /note="pol"
     gene            4495..5073
                     /note="vif"
     gene            5678..8278
                     /note="env"
     gene            5013..5303
                     /note="vpr"
     gene            244..1746
                     /note="gag"
     gene            8280..8900
                     /note="nef"
     gene            join(5423..5498,7862..8136)
                     /note="rev"
     other           5678..5782
                     /note="env peptide"
     other           6173..6289
                     /note="V2"
     other           150..233
                     /note="psi"
     other           6854..6958
                     /note="V4"
     other           7079..7117
                     /note="V5"
     other           6083..6172
                     /note="V1"
     other           6461..6826
                     /note="V3"
     protein         244..639
                     /note="p17"
     protein         640..1332
                     /note="p24"
     protein         1333..1374
                     /note="p2"
     protein         1375..1539
                     /note="p7"
     protein         1540..1587
                     /note="p1"
     protein         1588..1746
                     /note="p6"
     protein         1707..2003
                     /note="PR"
     protein         2004..3323
                     /note="RT"
     protein         3324..3683
                     /note="p15"
     protein         3684..4550
                     /note="IN"
     protein         5783..7240
                     /note="gp120"
     protein         7241..8278
                     /note="gp41"
     other           6071..6301
                     /note="V1V2ext"
     other           6842..6970
                     /note="V4ext"
     other           7061..7132
                     /note="V5ext"
ORIGIN
        1 ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccat
       61 tttagtcagt gtggaaaatc tctagcagtg gcgcccgaac agggacttga aagcgaaaga
      121 gaaaccagag gagatctctc gacgcaggac tcggcttgct gaagcgcgca cggcaagagg
      181 cgaggggcgg cgactggtga gtacgccaaa catttttgac tagcggaggc tagaaggaga
      241 gagatgggtg cgagagcgtc agtattaagc gggggagaat tagatagatg ggaaaaaatt
      301 cggttaaggc cagggggaaa gaaaaaatat aaattaaaac atatagtatg ggcaagcagg
      361 gagctagaac gattcgcagt taatcctggc ctgttagaaa catcagaagg ctgtagacaa
      421 atactgggac agctacaacc agcccttcag acaggatcag aagagtttag atcattatat
      481 aatacagtag caaccctcta ttgtgtacat caaaggatag aggtaaaaga taccaaggaa
      541 gctttagaga agatagagga agagcaaacc aaaagtaaga aaaaagcaca gcaagcagca
      601 gctgccacag gaaacagcag ccaggtcagt caaaattacc ctatagtaca gaacatccag
      661 gggcaaatgg tacatcagcc catatcacct agaactttaa atgcatgggt aaaggtaata
      721 gaagagaagg ctttcagccc agaagtaata cccatgtttt cagcattatc agaaggagcc
      781 accccacaag atttaaacac catgctaaac acagtggggg gacatcaagc agctatgcaa
      841 atgttaaaag agaccatcaa tgaggaagct gcagaatggg ataggttgca tccagtacaa
      901 gcagggcctg ttgcaccagg ccagataaga gaaccaaggg gaagtgacat agcaggaact
      961 actagtaccc ttcaggaaca aatagcatgg atgacacata atccacctat cccagtagga
     1021 gacatctata aaagatggat aatcctggga ttaaataaaa tagtaaggat gtatagccct
     1081 atcagcattc tggacataag acaaggacca aaggaatcct ttagagacta tgtagaccgg
     1141 ttctataaaa ctctaagagc cgagcaatgt acacaggagg taaaaagttg gatgacagaa
     1201 accttgttgg ttcaaaatgc gaacccagat tgtaagacta ttttaaaagc attgggacca
     1261 gcagctacac tagaagaaat gatgacagca tgtcagggag tgggaggacc cggccataaa
     1321 gcaagagttt tggctgaagc aatgagccaa gtaacaaatt cagctaccat aatgatgcaa
     1381 agaggcaatt ttaagaacca aagaaagatt gttaagtgtt tcaattgtgg caaagaaggg
     1441 cacatagcca gaaattgcag ggcccctagg aaaaagggct gttggaaatg tggaaaggaa
     1501 ggacatcaaa tgaaagattg tactgagaga caggctaatt ttttagggaa gatctggcct
     1561 tcccacaagg gaaggccagg gaattttctt cagagcaggc cagagccaac agccccacca
     1621 gaagagagct tcaggtttgg ggaagagaca acaactccct ctcagaagca ggaaccaata
     1681 gacaaggaac tgtatccttt agcttccctc agatcactct ttggcaacga cccctcgtca
     1741 caataaagat aggggggcaa ctaaaagaag ctctattaga tacaggagca gatgatacag
     1801 tagtagaaga aatggctttg ccaggaagat ggaaaccaaa aatgataggg ggaattggag
     1861 gttttatcaa agtaagacag tatgatcaga tactcataga aatctgtgga cataaagcta
     1921 taggtacagt attagtagga cctacacctg tcaacataat tggaagaaat ctgttgactc
     1981 agattggttg cactttaaat tttcccatca gtcctattga aactgtacca gtaaaattaa
     2041 agccaggaat ggatggccca aaagttaaac aatggccatt gacagaagaa aaaataaaag
     2101 cattagtaga aatttgtaca gaaatggaaa aggaagggaa aatttcaaaa attgggcctg
     2161 aaaatccata caatactcca gtatttgcaa taaagaaaaa agatagtact aaatggagaa
     2221 aattagtaga tttcagagaa cttaacaaga aaactcaaga cttctgggaa gttcaattag
     2281 gaataccaca tcccgcagga ttaaaaaaga aaaaatcagt aacagtactg gatgtgggtg
     2341 atgcatattt ttcagttccc ttagataaag acttcaggaa gtatactgca tttaccatac
     2401 ctagtataaa caatgaaaca ccagggatta gatatcagta caatgtgctt ccgcagggat
     2461 ggaaaggatc accagcaata ttccaatata gcatgacaaa aatcttagag ccttttagaa
     2521 aacaaaatcc agacatagtt atctatcaat acatggatga tttgtatgta ggatctgact
     2581 tagaaatagg gcagcataga gcaaaaatag aggaactgag acaacatctg ttgaggtggg
     2641 gatttaccac accagacaaa aaacatcaga aagaacctcc attcctttgg atgggttatg
     2701 aactccatcc tgataaatgg acagtacagc ctatagagct gccagaaaaa gacatctgga
     2761 ctgtcaatga catacagaag ttagtgggaa aattgaattg ggcaagtcag atttacgcag
     2821 ggattaaagt aagacagtta tgtaaactcc ttaggggaac caaagcacta acagaagtag
     2881 taccactaac aaaagaagca gagctagaac tggcagaaaa tagggagatt ctaaaagaac
     2941 cagtacatgg agtgtattat gacccaacaa aagacttaat agcagaacta cagaagcagg
     3001 ggcaaagcca atggacatat caaatttatc aagagccatt taaaaatctg aaaacaggaa
     3061 aatatgcaag aatgaggggt gcccacacta atgatgtaaa acaattaaca gaggcagtgc
     3121 aaaaaataac cacagaaagc atagtaatat gggggaagac tcctaaattt aaattaccca
     3181 tacaaaaaga aacatgggaa acatggtgga cagagtattg gcaagccacc tggattcctg
     3241 agtgggagtt tgtcaatacc cctcccttag tgaaattatg gtaccagtta gaaaaagaac
     3301 ccatagtagg agcagaaact ttctatgtag atggggcagc taacagggag actaaaatag
     3361 gcaaagcagg atatgttact aacagaggaa gacaaaaggt tgtctcccta actgacacaa
     3421 caaatcagaa aactgagtta caagcaattc atctagcttt gcaggattcg ggattagaag
     3481 taaacatagt aacagactca caatatgcat taggaatcat tcaagcacaa ccagataaaa
     3541 gtgaatcaga gttagtcagt caaataatag aggagttaat aaaaaaggaa aaggtctacc
     3601 tggcatgggt accagcacac aaaggaattg gaggaaatga acaagtagat aaattagtca
     3661 gtgctggaat caggaaagta ctatttttag atggaataga taaggcccaa gaagatcatg
     3721 acaaatatca cagtaattgg agagcaatgg ctagtgattt taacctgcca cctgtagtag
     3781 caaaagaaat agtagccagc tgtgataaat gtcagctaaa aggagaagcc atgcatggac
     3841 aagtagactg tagtccagga atatggcaac tagattgtac acatttagaa ggaaaagtta
     3901 tcctggtagc agttcatgta gccagtggat acatagaagc agaagttatt ccagcagaga
     3961 cagggcagga aacagcatac tttctcttaa aattagcagg aagatggcca gtaacaacaa
     4021 tacatacaga caatggcagc aatttcatca gtactacagt aaaggccgcc tgttggtggg
     4081 cggggatcaa gcaggaattt ggcattccct acaatcccca aagtcaagga gtagtagaat
     4141 ctatgaataa agaattaaag aaaattatag gacaggtaag agatcaggct gaacatctta
     4201 agacagcagt acaaatggca gtattcatcc acaattttaa aagaaaaggg gggattgggg
     4261 ggtacagtgc aggggaaaga ataatagaca taatagcaac agacatacaa actaaagaac
     4321 tacaaaaaca aattacaaaa attcaaaatt ttcgggttta ttacagggac agcagagatc
     4381 cactttggaa aggaccagca aagctcctct ggaaaggtga aggggcagta gtaatacaag
     4441 ataatagtga cataaaagta gtgccaagaa gaaaagcaaa gatcattaag gattatggaa
     4501 aacagatggc aggtgatgat tgtgtggcag gtagacagga tgaggattag aacatggaaa
     4561 agtttagtaa aacaccatat gtatgtttca gggaaagcta aaggatggtt ttatagacat
     4621 cactatgaaa gcactcatcc aagaataagt tcagaagtac acatcccact aggggaggct
     4681 agattggtaa taacaacata ttggggtctg catacaggag aaagagactg gcatttgggt
     4741 cagggagtct ccatagaatg gaggaaaagg agatatagca cacaagtaga ccctagccta
     4801 gcagaccagc taattcatat gtattacttt gattgttttt cagactctgc tataagaaaa
     4861 gccatattag gacatatagt tagtcctagt tgtgaatatc aagcaggaca taacaaggta
     4921 ggatctctac agtacttggc actaacagca ttaataacac caaaaagaag aaagccacct
     4981 ttgcctagtg ttacgaaact gacagaggat agatggaaca agccccagaa gaccaagggc
     5041 cacagaggga gccatacaat gaatggacac tagagctttt agaggagctt aagaatgaag
     5101 ctgttagaca ctttcccagg atatggctcc atggattagg gcaacatata tatgaaactt
     5161 atggggatac ttgggcagga gtagaagcca taataagaat tctgcaacaa ctgctgttta
     5221 ttcatttcag aattgggtgt caacatagca gaataggcat tactcgacag aggagaacaa
     5281 gaaatggagc cagtagatcc tagcctagag ccctggaagc atccaggaag tcagcccaag
     5341 actgcttgca ccacttgcta ttgtaaaaaa tgttgctttc attgtcaagt ctgtttcata
     5401 acaaaaggct taggcatctc ctatggcagg aagaagcgga gacagcgacg aagatctcct
     5461 caagacagtc agactaatca agcttctcta tcaaagcagt aagtagtaca tgtaatgcaa
     5521 cctttagtga tattagcaat agtagcatta gtagtagtaa caataatagc aatagttgtg
     5581 tggaccatag tattcataga atataggaaa atattaagac aaagaaacat agataggtta
     5641 attgatagaa taagagaaag agcagaagac agtggcaatg agagtgaagg agaccaggaa
     5701 gaattatcgg cactggtgga gatggggcac catgctccaa tggggcacca tgctccttgg
     5761 gatgttgatg atctgtagtg ctgcagaaga taagtgggtc acagtctatt atggggtacc
     5821 tgtgtggaaa gaagcaaaca ccactctatt ttgtgcatca gatgctaaag catatgatac
     5881 agaggtacat aatgtttggg ccacacatgc ctgtgtaccc acggacccca acccacaaga
     5941 agtagtattg gaaaatgtga cagaaaattt tgacatgtgg aaaaataaca tggtagaaca
     6001 gatgcatgag gatataatca gtttatggga tcaaagccta aagccatgtg taaaattaac
     6061 cccactctgt gttactttaa actgcactga tgtggggaat gctactaaca cgaatgctac
     6121 taacaccaat agtagtagcg gggaactgat ggagacagga gaaataaaaa actgctcttt
     6181 caatatcacc acaaggataa aaaataagat tcagaaagaa tatgcacttt tctataaact
     6241 tgatgtagta caaatgggta atactagcag ctataggttg ataagttgtg acacctcagt
     6301 cattacacag gcctgtccaa aggtaacctt tgagccaatt cccatacatt attgtgcccc
     6361 ggctggtttt gcgattctaa agtgtaaaga taagaagttc agtggaagag gaccatgtac
     6421 aaatgtcagc acagtacaat gtacacatgg aattaggcca gtagtgtcaa ctcaactgct
     6481 gttaaatggc agtctagcag aagaagaggt agtagttaga tctgaaaatt tcacaaacaa
     6541 tgctaaaacc ataatagtac agctgaatga atctgtagaa attgattgta caagacccaa
     6601 caacaataca aggaaaagta tacatatggg atcagggaaa gcattgtatg caacaggaga
     6661 gataatagga gatataagac aagcatattg taaccttagt agaacaaaat ggaataacac
     6721 tttaaaacag atagttacaa aattaagaga acaaccacaa tttgggaata aaacaatagt
     6781 ctttaatcaa tcctcaggag gggacctaga agttgtaaca cacattttta attgtggagg
     6841 ggaatttttc tactgtaata caacacaact gtttaatagt acttggctgt ttaatggtac
     6901 taagaatgat actactgaag ggttaaataa cactggagaa aatatcatac tcccatgcag
     6961 aataaaacaa attgtaaaca tgtggcagga agtaggaaaa gcaatgtatg cccctcccat
     7021 cagaggacaa attagatgtt catcaaatat tacagggctg ctattaataa gagatggtgg
     7081 taacacaaac gagactacta ctgagatctt cagacctgga ggaggaaata tgaaggacaa
     7141 ttggagaagt gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc
     7201 caccaaggca aagagaagag tggtgcagag agaaaaaaga gcagtgggac tgggagcttt
     7261 gttccttggg ttcttgggag cagcaggaag cactatgggc gcagcgtcac taacgctgac
     7321 ggtacaggcc agacaattgt tgtctggtat agtgcaacag cagaacaatt tgctgagggc
     7381 tattgaggcg caacaacatc tgttgcaact cacagtctgg ggcatcaagc agctccaggc
     7441 aagagtcctg gctgtggaaa gatacctaaa ggatcaacag ctcctaggga tttggggttg
     7501 ctctggaaaa ctcatttgca ccactactgt gccttggaat aatagttgga gtaataaatc
     7561 tctggatcag atttgggaaa acatgacctg gatgcagtgg gaaaaagaaa ttgacaatta
     7621 cacaggctta atatacacat tacttgaaaa atcgcagaac caacaagaaa agaatgaaca
     7681 agaattattg gaattggata aatgggcaag tttgtggaat tggtttgaca taacacaatg
     7741 gctgtggtat ataaaaatat tcataatgat agtaggaggc ttaataggtt taagaatagt
     7801 ttttgctgta ctttctatag tgaatagagt taggcaggga tactcaccat tatcgtttca
     7861 gacccgcctc ccagcctcga ggggacccga caggcccgaa ggaatagaag aagaaggtgg
     7921 agagagagac agaggcagat ccagaccatt agtggatgga ttcttagcac ttatctggga
     7981 cgatctgagg agcctgtgcc tcttcagcta ccaccgcttg agagacttac tcttgattgt
     8041 aacgaggatt gtggaacttc tgggacgcag ggggtgggaa gcactcaaat attggtggaa
     8101 tctcctacaa tattggagtc aggaactaaa gaatagtgct gttagcttgc tcaatgccac
     8161 agctatagca gtagctgagg ggacagatag ggttatagaa gtaatacaaa gagcttatag
     8221 agctattatt cacatacctg taagaataag acagggcttg gaaagggctt tgctataaaa
     8281 tgggtggcaa gtggtcaaaa agtagtgtgg ttggctggcc tgctataagg gaaagaatga
     8341 gacgaactga gccagcagca gagggggtgg gagcagtatc tcgagacctg gaaaaacatg
     8401 gagcaatcac aagtagcaat acagcagcta ctaatgctga ttgtgcctgg ctagaagcac
     8461 aagaggagga ggaagtgggt tttccagtca aacctcaggt acctttaaga ccaatgactt
     8521 acaaggcagc tatggatctt agccactttt taaaagaaaa ggggggactg gaagggctaa
     8581 ttcactccca aaaaagacaa gatatccttg atctgtggat ctaccacaca caaggctact
     8641 tccctgattg gcagaactac acaccagggc cagggatcag atatccactg acctttggat
     8701 ggtgcttcaa gctagtacca gttgagccag agaagataga agaggccaat gaaggagaga
     8761 acaactgctt gttacaccct atgagcctgc atgggataga ggacccggag agggaagtgt
     8821 tacagtggaa gtttgacagc agcctagcat ttcatcacaa ggcccgagag ctgcatccgg
     8881 agttttacaa gaactgctga catcgagctt tctacaaggg actttccgct ggggactttc
     8941 cagggaggcg tggcctgggc gggactgggg agtggcgagc cctcagatgc tgcatataag
     9001 cagctgcttt ttgcctgtac tgggtctctc tggttagacc agatctgagc ctgggagctc
     9061 tctggctagc tagg
//
