LOCUS       reference_p6            9031 bp    DNA              UNK 23-SEP-2015
DEFINITION  reference for patient p6, genomewide
ACCESSION   reference_p6
VERSION     reference_p6
KEYWORDS    .
SOURCE      
  ORGANISM  HIV-1
            .
FEATURES             Location/Qualifiers
     fragment        1..1757
                     /note="F1"
     fragment        1462..3302
                     /note="F2"
     fragment        3092..4619
                     /note="F3"
     fragment        4357..6021
                     /note="F4"
     fragment        5417..7430
                     /note="F5"
     fragment        7223..9031
                     /note="F6"
     RNA_structure   7184..7417
                     /note="RRE"
     RNA_structure   1..87
                     /note="LTR5'"
     RNA_structure   8529..9031
                     /note="LTR3'"
     gene            5516..5761
                     /note="vpu"
     gene            join(5264..5478,7794..7884)
                     /note="tat"
     gene            1531..4530
                     /note="pol"
     gene            4475..5053
                     /note="vif"
     gene            5679..8231
                     /note="env"
     gene            4993..5283
                     /note="vpr"
     gene            245..1726
                     /note="gag"
     gene            8237..8857
                     /note="nef"
     gene            join(5403..5478,7794..8089)
                     /note="rev"
     other           5679..5765
                     /note="env peptide"
     other           6147..6266
                     /note="V2"
     other           150..234
                     /note="psi"
     other           6825..6887
                     /note="V4"
     other           7008..7052
                     /note="V5"
     other           6066..6146
                     /note="V1"
     other           6438..6797
                     /note="V3"
     protein         245..634
                     /note="p17"
     protein         635..1327
                     /note="p24"
     protein         1328..1369
                     /note="p2"
     protein         1367..1531
                     /note="p7"
     protein         1532..1579
                     /note="p1"
     protein         1580..1726
                     /note="p6"
     protein         1687..1983
                     /note="PR"
     protein         1984..3303
                     /note="RT"
     protein         3304..3663
                     /note="p15"
     protein         3664..4530
                     /note="IN"
     protein         5766..7175
                     /note="gp120"
     protein         7173..8231
                     /note="gp41"
     other           6054..6278
                     /note="V1V2ext"
     other           6813..6899
                     /note="V4ext"
     other           6990..7067
                     /note="V5ext"
ORIGIN
        1 tctaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagacttc
       61 ttttgtccgt gtggaaaatc tctagcagtg gcgcccgaac agggacttga aagcgaaagt
      121 aagaccagag gagatctctc gacgcaggac tcggcttgct gaaagtgcac tcggcaagag
      181 gcgagagcgg cggctggtga gtacgccaaa ttttatttga ctagcggagg ctagaaggag
      241 agagatgggt gcgagagcgt caatattaag aggcggaaaa ttagatacct gggaaagaat
      301 taagttaagg ccagggggaa agaaacatta tatgatgaaa cacctagtat gggcaagcag
      361 ggagctggaa aaattttcac ttaaccctgg ccttttagaa acatcagaag gctgtaggca
      421 aataatgaaa cagctacaac cagctcttca gacaggaaca gaggaactta aatcattatt
      481 taatacagta gcaactctct attgtgtaca tgcacagata gagatacgag acaccaagga
      541 agccttagac aaaatagagg aagaacaaaa caaaagtcag caaaaagcac agcaggcaga
      601 agcagctgac aaaggaaagg tcagccaaaa ttatcctata gtgcagaatc tccaagggca
      661 aatgacacac cagcccatat cacctagaac tttgaatgcg tgggtaaaag taatagagga
      721 gaaggctttc agcccagagg taatacccat gttcacagca ttatcagaag gagccacccc
      781 agcagatttg aacactatgt taaatacagt agggggacac caagcagcca tgcagatgtt
      841 aaaagatacc attaatgagg aggctgcaga atgggacaga ttacatccag tgcaggcagg
      901 gcctgttgca ccaggccaaa taagagaacc aaggggaagt gacatagcag gaactactag
      961 tacccttcag gagcaaataa catggatgac aaataatcca cctattccag taggagatat
     1021 ctataaaaga tggataattc tgggattaaa taaaatagta agaatgtata gccctgtcag
     1081 cattttggac ataaaacaag ggccaaagga accttttaga gactatgtag atcggttctt
     1141 taaaacttta agagctgaac aagctacaca agatgtaaaa aattggatga cagacacctt
     1201 gttggtccaa aatgcgaacc cagattgtaa gaccatttta agagcattag ggccaggggc
     1261 ttcattagag gaaatgatga cagcatgtca gggagtagga ggacctagtc acaaagcaag
     1321 agtgttggct gaggcaatga gtcaagcgaa ccagacaagc ataatgatgc agagaggcaa
     1381 ttttagaagc cctaaaagaa ctattaaatg tttcaactgt ggcaaggaag ggcacctagc
     1441 cagaaactgc agggccccta ggaaaaaggg ctgttggaaa tgtggaaagg aaggacacca
     1501 aatgaaggac tgtactgaga ggcaggctaa ttttttaggg aaaatttggc cttcccacaa
     1561 ggggaggcca gggaacttcc ttcagagcag accagagcca acagccccac cagcagagag
     1621 cttcaggttc gaggagacaa cccctcctcc gaagcaagag ccgaaagaca gggaaccttt
     1681 aacttccctc aaatcactct ttggcagcga ccccttgtca caataaaaat aggaggacaa
     1741 ataaaggagg ctctcttaga cacaggagca gatgatacag tattagagga aattaaattg
     1801 ccaggaaatt ggaaaccaaa aatgataggg ggaattggcg gttttatcaa agtaagacag
     1861 tatgatcaaa taactataga aatttgtgga aaaaaggcta taggtacagt attagtagga
     1921 cctacaccta tcaacataat tggaagaaat atgttgactc agcttggatg cacactaaat
     1981 tttccaatta gccccattga aactgtacca gtaaagttaa agccaggaat ggatggccca
     2041 aaggtcaaac aatggccatt gacagaagaa aaaataaaag cattaacagc aatttgtgaa
     2101 gagatggaaa aggaaggaaa aattacaaaa attgggcctg aaaatccata taacactcca
     2161 gtatttgcca taaaaaagaa agatagtact aagtggagaa aattagtaga ttttagggaa
     2221 ctcaataaaa gaactcaaga cttctgggaa gttcaattag ggataccaca cccagcaggg
     2281 ttaaaaaaga gaaaatcagt aacagtattg gatgtggggg atgcatattt ttcagttcct
     2341 ttagatgaaa gctttaggaa atatactgca ttcaccatac ccagtataaa caatgaaaca
     2401 ccagggatta gatatcaata taatgtgctt ccacaaggat ggaaaggatc accagcaata
     2461 ttccagagta gcatgacaag aatcttagag ccctttcggg cacaaaaccc agacatagtt
     2521 atctatcaat acatggatga cttgtatgta ggatctgact tagaaatagg gcaacataga
     2581 gcaaaaatag aggagttaag agaacatcta ttgaaatggg gacttaccac cccagacaag
     2641 aaacatcaga aagaaccccc atttctttgg atggggtatg aactccatcc tgacaaatgg
     2701 acagtacagc ctatacagct gccagaaaag gagagctgga ctgtcaatga tatacagaag
     2761 ttagtgggaa aattaaactg ggcaagtcag atttacccag ggatcaaggt aaagcaattg
     2821 tgtagactcc ttaggggagc caaagcacta acagaaatag taccactgac tgaagaagca
     2881 gaattagaat tggcagagaa cagggaaatt ctaagagaac cagtacatgg ggtatattat
     2941 gacccatcaa aagacttaat agctgaaata cagaaacagg ggcatgacca atggacatat
     3001 caaatttatc aagaaccttt caaaaatctg aaaacaggga aatatgcaaa aatgaggact
     3061 gcccacacta atgatgtaaa acaattaaca gaggcagtgc aaaaaatatc cctggaaagc
     3121 atagtaatat ggggaaagac tcctaaattt agattaccca tccagaaaga aacatgggag
     3181 tcatggtgga cagactattg gcaagccacc tggatccctg agtgggaatt tgttaatacc
     3241 cctcctctag taaagttatg gtaccagtta gaaaaagaac ccatagtagg agcagaaact
     3301 ttctatgtag atggagcatc taatagggaa actaaaatgg gaaaagcagg gtatgttaca
     3361 gacagaggaa ggcaaaaaat tgtttcccta actgaaacaa caaatcagaa gactgaatta
     3421 caagcaattc acctagcttt gcaggattca ggatcagaag taaacatagt aacagactca
     3481 cagtatgcat taggaattat tcaagcacaa ccagataaaa gtgaatcaga gttagtcaat
     3541 caaataatag aacaattaat aaaaaaggaa agggtctacc tgtcatgggt accagcacat
     3601 aaaggaattg gaggaaatga acaagtagat aaattagtaa gtaatggaat caggaaagta
     3661 ctgtttctag atggaataga taaggctcaa gaagagcatg aaaaatatca cagcaattgg
     3721 agagcaatgg ctagtgattt taacctgcca cccatagtag caaaagaaat agtagctagc
     3781 tgtgataaat gtcagctaaa aggggaagcc atacatggac aagtagactg tagtccagga
     3841 atatggcaat tagattgtac acatttagaa gggaaaatta tcctggtagc agtccatgta
     3901 gccagtggct acatagaagc agaggttatt ccagcagaaa caggacaaga aacagcatac
     3961 tttatactaa aattagcagg aagatggcca gtcaaagtaa tacatacaga caatggcagt
     4021 aatttcacca gtagtgcagt caaggcagcc tgttggtggg caggtatcca acaggaattt
     4081 ggaattccct acaatcccca aagtcaggga gtagtagaat ccatgaataa agaattaaag
     4141 aaaatcatag gacaggtaag agagcaagct gagcatctta agacagcagt acagatggca
     4201 gtattcattc acaattttaa aagaaaaggg gggattgggg ggtacagtgc aggggaaaga
     4261 ataatagata taatagcaac agacatacaa actaaagaac tacaaaacca aattttaaaa
     4321 attcgaaatt ttcgggttta ttacagagac agcagagacc ctatttggaa aggaccagcc
     4381 aaactactct ggaaaggtga aggggcagta gtaatacaag ataacagtga cataaaggta
     4441 gtaccaagga ggaaagtaaa aatcattaag gactatggaa aacagatggc aggtgctgat
     4501 tgtgtggcaa gtagacagga tgaggatcag aacatggaat agtttagtaa agcaccacat
     4561 gtatgtttca aagagagcta atggatggtt ttatagacat cattatgaaa gcagacatcc
     4621 aagaacaagt tcagaagtac acatcccact aggggaggct aaattagtaa taataacata
     4681 ttggggtttg caaacaggag aaagggattg gcatctgggc catggggtct ccatagaatg
     4741 gagactgaaa agatatagta cacaagtaga ccctggcctg gcagaccaac taattcatat
     4801 gcattatttt gattgttttg cagactctgc cataaggaaa gccatattag gacatagagt
     4861 tagccctagg tgtgattatc cagcaggaca taataaggta ggatctctac aatatctggc
     4921 actggcagca ttgataaagc caaaaaggag aaagccacct ctgcctagtg ttagtaaatt
     4981 agtagaggat aaatggaaca agccccagaa gaccaggggc cgcagaggga gccatacaat
     5041 gaatggacac tagagctttt agaggaactc aagcaggaag ctgtcagaca ttttccgaga
     5101 ccatggctcc atagcctagg acaatatatc tatgaaacct atggggatac ttggacggga
     5161 gtcgaagcta taataagaac tctgcaacaa ctactgtttg tccatttcag aattgggtgt
     5221 cagcatagcc gaataggcat tgtgcgacag agaagagcaa gaaatggagc cagtagatcc
     5281 taacctagag ccctggaacc acccaggaag tcagcctaaa actgcttgta ataactgtta
     5341 ttgtaaagta tgtagctatc attgtctagt ttgctttcag accaaaggct taggcatttc
     5401 ctatggcagg aagaagcgga gacagcgacg cagcgctcct ccaagcagta aggatcatca
     5461 ggatcttata tcaaagcagt aagtaccaat agtaggtgta atggtagatt tattagcaag
     5521 agtagattat agattaggag taggagcatt gataatagca ctgatcatag taatagttgt
     5581 gtggaccata gtatatatag aatataggaa attgttaaga caaaggaaaa tagactggtt
     5641 agtcaaaaga attagggaaa gagcagaaga cagtggcaat gagagtgatg gggacacaga
     5701 ggaattgtca acaatggtgg acatggggaa tattaggctt ttggatgttt atgatttata
     5761 atgtgatggg gaacttatgg gtcacagtct attatggggt acctgtgtgg aaagaagcag
     5821 aaaccacact attttgtgca tcagatgcca aagcatatga tacagaagtg cataatgtct
     5881 gggctacaca tgcctgtgta cccacagacc ccaacccaca agaaatagtt ttggaaaatg
     5941 taacagaaaa ttttaatatg tggaaaaatg gcatggtaga gcagatgcag caggatataa
     6001 tcagtttatg ggatcaaagc ctaaagccat gtgtaaagct gaccccactc tgtgttactt
     6061 tagactgtgt gaagcttaat atcagtgaaa agcttaatat cagtattgat aatagtacta
     6121 tggaaactat ggaagaaatg agaaattgta ctttcaatat aacccaagag ctaagagata
     6181 agagaaagca agaatatgca cttttttata aacttgatat agtatcactt gataataagt
     6241 ctaataaatc tagattaata agttgtaata cctcagtcat aacacaagcc tgtccaaaga
     6301 tctcttggga cccaattcct atacattatt gtgctccagc tggttatgcg attctaaagt
     6361 gtaataataa gacattcaat ggtacaggac catgcaataa catcagcact gtacaatgta
     6421 cacatggaat taaaccagtg gtatcaactc aactactgct aaatggtagt ctagcagaag
     6481 aagagatagt aattagatct gaaaatctgg ataacaatgc caaaacaata atagtacatc
     6541 ttaatgaatc tgtagaaatt gagtgtacga gacccaacaa taatacaaga agaggtatag
     6601 ggataggacc aggacaaaca ttctatgcag caggggccat aataggaaac ataagacaag
     6661 catattgtaa cattaatgga gaaaaatgga atacaacttt acaaagggta aaagacaaat
     6721 tacaacagta cttccctaat agaacaataa catttaacca acattcagga ggggacctag
     6781 aaattacaac acatagcttt aattgtagag gagaattttt ctattgcaat acatcaaacc
     6841 tgtttaataa taatattaca acttcagaaa acatcacact ccaatgtaaa ataaaacaat
     6901 ttataaacat gtggcagagg gtaggaagag caatgtatgc ccctcccatt gcaggaatca
     6961 taacatgtag atcaaatatc acaggaatat tactgacacg tgatggagga agaaataaca
     7021 caggagcaaa taacacagaa atattcagac ccggaggagg agatatgaga gacaattgga
     7081 gaagtgaatt atataagtat aaagtggtag aagttaatcc attaggaata gcacccacca
     7141 aggcaaaaag gagagtggtg gggagagaaa aaagagcagc actaggagct gtattccttg
     7201 ggttcttggg agtagcagga agcactatgg gcgtagcgtc aatggcgctg acggtacaag
     7261 ccagacaatt attgtcaggt atagtgcaac agcaaaacaa tttgctgagg gctatagagg
     7321 cgcaacagca tatgttgcaa ctcacagtct ggggcattaa gcagctccag acaagagtcc
     7381 tggctataga aagataccta agggaccaac agctcctagg gatttggggc tgctctggaa
     7441 aactcatctg caccactgct gtgccttgga actctagttg gagtaataaa tctcaagagg
     7501 agatttggaa taacatgacc tggatgcagt gggataaaga aattagtaat tatacacaat
     7561 taatatacaa cttgcttgag gaatctcaaa accagcagga aaacaatgaa aaagatttgc
     7621 tagcattgga caaatggcaa aatttgtgga attggtttaa cataacaaat tggctgtggt
     7681 atataaaaat atttataatg atagtaggag gcttaatagg tttaagaata atttttgctg
     7741 tgctctctat agtgaataga gttaggcagg gatactcacc cttatcgttt cagaccctta
     7801 tcccaaaccc gagggaaccc gacaggcccg gaagaatcga agaagaaggt ggagagcaag
     7861 acagagacag atccattcga ttagtgagcg gattcttagc acttgcctgg gacgatctgc
     7921 ggaacctgtg cctcttcagc taccaccgat tgagagactt aatattgatt gtaacgagag
     7981 tgatagagct tctggggcgc agcagcctca ggggactaca gagggggtgg gaaaccctta
     8041 aatatctagg aagtattgtg cagtattggg gtctggaact aaaaaagagt gctattaggc
     8101 tgcttgatac cacagcaata gcagtagctg aaggaacaga tagaattata gaactaatac
     8161 aaagaatttg tagagctatc tgccatatac ctagaagaat aagacagggc tttgaagcag
     8221 ctttgcaata aataacatgg ggggcaaatg gtcaaaatgt agcccagtgg gatggcctga
     8281 tataagagaa agaataagac aaactgatcc agcagcagag ggagtagggg cagcgtctca
     8341 agacctagac aaatatgggg cacttacaag caacaacaca cccagcaata atgctgcttg
     8401 tgcctggctg gaagcgcaag agcaggaaga agaggtaggc tttccagtca gacctcaagt
     8461 acctttaaga ccaatgactt ataagggagc actcgatctc agcttctttt taaaagaaaa
     8521 ggggggactg gaagggttaa tttactccaa gagaaggcaa gatatccttg atttgtgggt
     8581 ctataacaca caaggctact tcccggattg gcaaaactac acaccaggac cagggatcag
     8641 atatccactg acctttggat ggtgcttcaa gttagtgcca gttgacccaa aggaagtgga
     8701 ggccaatgaa ggagaaacca actgcttgct gcaccctatg agcctgcatg gagcagagga
     8761 tgaagacaga gaagtattaa ggtggaagtt tgacagcagc ctagcacgca gacacttggc
     8821 ccgtgagcta catccggagt attacaaaga ctgctgacac agaagggact ttccgctggg
     8881 actttccact ggggcgttcc aggaggaggg gtctgggcgg gactgggagt ggccaaccct
     8941 cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctag gtagaccaga
     9001 tctgagcctg ggagctctct ggccatctag g
//
