Analyses
Viral load and CD4+ counts Viral load and CD4+ counts Genome sequences Genome sequences Consensus sequences Consensus sequences Phylogenetic trees Phylogenetic trees Divergence and diversity Divergence and diversity Local divergence and diversity Local divergence and diversity Coverage Coverage Single nucleotide polymorphisms Single nucleotide polymorphisms Haplotypes Haplotypes

Coverage

Coverage indicates how many times each base in the genome was sequenced. The reciprocal value is the maximal sequencing depth, but the total depth is often limited by the number of HIV molecules in the plasma samples or by the error rate of the PCR polymerase.

Legend: the red bar is the estimate of the number of template molecules to PCR (if available). Coverage beyond this level is mostly oversequencing.