Publications using project data


Population genomics of intrapatient HIV-1 evolution

F. Zanini, L. Thebo, J. Brodin, C. Lanz, G. Bratt, J. Albert, and R. Neher

eLIFE, 10.7554/eLife.11282


In-vivo mutation rates and fitness landscape of HIV-1

Fabio Zanini, Vadim Puller, Johanna Brodin, Jan Albert, Richard Neher

Virus Evolution, vol. 3, 2017, 10.1093/ve/vex003


Establishment and stability of the latent HIV-1 DNA reservoir

Johanna Brodin, Fabio Zanini, Lina Thebo, Christa Lanz, Göran Bratt, Richard Neher, Jan Albert

eLife, vol. 5, 2016, 10.7554/eLife.18889


Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection

Raghwani, Rose, Sheridan, Lemey, Suchard, Santantonio, Farci, Klenerman, Pybus

PLoS Pathogens, 10.1371/journal.ppat.1005894


Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G to A mutations

Marion Hartl, Kristof Theys, Alison Feder, Maoz Gelbart, Adi Stern, Pleuni S Pennings

biorxiv preprint, 10.1101/057026


Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing

Fabio Zanini, Johanna Brodin, Jan Albert, Richard Neher

Virus research, 2016, 10.1016/j.virusres.2016.12.009


Estimating Time Of HIV-1 Infection From Next-Generation Sequence Diversity

Vadim Puller, Richard Neher, Jan Albert

biorxiv, 2017, 10.1101/129387
Please let us know if we missed any papers building on these data. Last updated: 07/03/2017