Analyses
Viral load and CD4+ counts Viral load and CD4+ counts Genome sequences Genome sequences Consensus sequences Consensus sequences Phylogenetic trees Phylogenetic trees Divergence and diversity Divergence and diversity Local divergence and diversity Local divergence and diversity Coverage Coverage Single nucleotide polymorphisms Single nucleotide polymorphisms Haplotypes Haplotypes

Divergence and diversity

Genetic divergence measures the fraction of genetic sites that have mutated in the viral population from the initial virus. Diversity indicates the fraction of mutated sites within a single viral population.