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Population genomics of intrapatient HIV-1 evolution
F. Zanini, L. Thebo, J. Brodin, C. Lanz, G. Bratt, J. Albert, and R. Neher
eLIFE, 10.7554/eLife.112822.
In-vivo mutation rates and fitness landscape of HIV-1
Fabio Zanini, Vadim Puller, Johanna Brodin, Jan Albert, Richard Neher
Virus Evolution, vol. 3, 2017, 10.1093/ve/vex0033.
Establishment and stability of the latent HIV-1 DNA reservoir
Johanna Brodin, Fabio Zanini, Lina Thebo, Christa Lanz, Göran Bratt, Richard Neher, Jan Albert
eLife, vol. 5, 2016, 10.7554/eLife.188894.
Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection
Raghwani, Rose, Sheridan, Lemey, Suchard, Santantonio, Farci, Klenerman, Pybus
PLoS Pathogens, 10.1371/journal.ppat.10058945.
Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G to A mutations
Marion Hartl, Kristof Theys, Alison Feder, Maoz Gelbart, Adi Stern, Pleuni S Pennings
biorxiv preprint, 10.1101/0570266.
Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing
Fabio Zanini, Johanna Brodin, Jan Albert, Richard Neher
Virus research, 2016, 10.1016/j.virusres.2016.12.0097.
Estimating Time Of HIV-1 Infection From Next-Generation Sequence Diversity
Vadim Puller, Richard Neher, Jan Albert
biorxiv, 2017, 10.1101/129387Please let us know if we missed any papers building on these data. Last updated: 07/03/2017